We provide example pre-calculated runs on three different complexes:
Complex 1: Interaction between MDM2 and p53 proteins (PDB ID: 1YCR, interface cut-off: 5.0Å, IQR threshold: 1.5).
Results page: http://proton.tools.ibg.edu.tr:8001/result/MDM2_p53_EvoEF1
Complex 2: Interaction between ACE2 and RBD proteins (PDB ID 6M0J, interface cut-off: 7.0Å, IQR threshold: 1.5).
Results page: http://proton.tools.ibg.edu.tr:8001/result/ACE2_RBD_EvoEF1
Complex 3-Light Chain: Interaction between immunoglobulin Fab D3H44, light chain and tissue factor (PDB ID: 1JPS, interface cut-off: 5.0Å, IQR threshold: 1.5).
Results page: http://proton.tools.ibg.edu.tr:8001/result/1JPS_LightChain_TissueFactor
Complex 3-Heavy Chain: Interaction between immunoglobulin Fab D3H44, heavy chain and tissue factor (PDB ID: 1JPS, interface cut-off: 5.0Å, IQR threshold: 1.5).
Results page: http://proton.tools.ibg.edu.tr:8001/result/1JPS_HeavyChain_TissueFactor
